Protein MCP Server
Rank #3,932io.github.cyanheads/protein-mcp-server
Retrieves and analyzes 3D protein structural data from RCSB PDB, PDBe, and UniProt
Protein MCP Server is a Model Context Protocol (MCP) server published by cyanheads. It ranks #3,932 of 77,308 servers tracked on MCP Toplist, and its repository has 5 GitHub stars. Protein MCP Server is listed across 3 registries — Official MCP, PulseMCP and Glama, with 4 tracked versions. It was first listed on Oct 2, 2025 and most recently updated on Jul 3, 2026.
Ranks ahead of 73,376 of 77,308 servers on MCP Toplist.
Use Protein MCP Server
Add Protein MCP Server to any MCP client (Claude, Cursor, VS Code, …) with one of the configs below.
{
"mcpServers": {
"protein-mcp-server": {
"url": "https://protein.caseyjhand.com/mcp"
}
}
}{
"mcpServers": {
"protein-mcp-server": {
"command": "npx",
"args": [
"-y",
"@cyanheads/protein-mcp-server"
],
"env": {
"MCP_LOG_LEVEL": "<your MCP_LOG_LEVEL>"
}
}
}
}Replace each placeholder with your own value before saving.
{
"mcpServers": {
"protein-mcp-server": {
"command": "npx",
"args": [
"-y",
"@cyanheads/protein-mcp-server"
],
"env": {
"MCP_HTTP_HOST": "<your MCP_HTTP_HOST>",
"MCP_HTTP_PORT": "<your MCP_HTTP_PORT>",
"MCP_HTTP_ENDPOINT_PATH": "<your MCP_HTTP_ENDPOINT_PATH>",
"MCP_AUTH_MODE": "<your MCP_AUTH_MODE>",
"MCP_LOG_LEVEL": "<your MCP_LOG_LEVEL>"
}
}
}
}Replace each placeholder with your own value before saving.
Show your rank
Maintain this server? Add the live rank badge to your README — it updates automatically as the leaderboard changes.
[](https://mcptoplist.com/server/io.github.cyanheads%2Fprotein-mcp-server)<a href="https://mcptoplist.com/server/io.github.cyanheads%2Fprotein-mcp-server"><img src="https://mcptoplist.com/badge/io.github.cyanheads%2Fprotein-mcp-server.svg" alt="MCP Toplist: Top 10% of 77,308" /></a>Variants: append ?metric=score or ?metric=stars to the image URL.
Listed on 1 registry (2 delisted)
cyanheads
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Available versions (4)
| Version | Published |
|---|---|
| 0.3.0 | Jul 3, 2026 |
| 0.1.1 | Jun 18, 2026 |
| 1.0.3 | Oct 2, 2025 |
| 0.1.0 | Nov 25, 2024 |
Frequently asked questions
- Who maintains Protein MCP Server?
- Protein MCP Server is maintained by cyanheads, which publishes 129 MCP servers (821 total versions) tracked on MCP Toplist.
- Is Protein MCP Server listed on the Official MCP Registry?
- Yes — Protein MCP Server is listed on the Official MCP Registry, alongside PulseMCP and Glama.
- How many versions does Protein MCP Server have?
- MCP Toplist tracks 4 versions of Protein MCP Server, most recently published on Jul 3, 2026.
- Where can I find the source code for Protein MCP Server?
- The source code for Protein MCP Server is hosted at github.com/cyanheads/protein-mcp-server.