SERVER

vmd-hydrate-mcp

Rank #24,223

io.github.wjgoarxiv/vmd-hydrate-mcp

Drive VMD for GROMACS/LAMMPS analysis + clathrate-hydrate cage science (needs a local VMD)

2 versions

by wjgoarxiv (2 servers)View repository ↗Claim this server

First listed

Jul 2, 2026

Last publish date

Jul 3, 2026

OVERVIEW

vmd-hydrate-mcp is a Model Context Protocol (MCP) server published by wjgoarxiv. It ranks #24,223 of 132,113 servers tracked on MCP Toplist. vmd-hydrate-mcp is listed across 3 registries — Official MCP, PulseMCP and Glama, with 2 tracked versions. It was first listed on Jul 2, 2026 and most recently updated on Jul 3, 2026.

STANDING

#24,223of 132,113 tracked serversTop 25%

Ranks ahead of 107,890 of 132,113 servers on MCP Toplist.

CONNECT

Use vmd-hydrate-mcp

No setupRuns out of the box

No credentials or required configuration declared — add it to your MCP client and go.

Python package (PyPI)

claude mcp add vmd-hydrate-mcp -- uvx vmd-hydrate-mcp

Python package (PyPI)

[mcp_servers.vmd-hydrate-mcp]
command = "uvx"
args = ["vmd-hydrate-mcp"]

Add to ~/.codex/config.toml.

Python package (PyPI)

{
  "mcpServers": {
    "vmd-hydrate-mcp": {
      "command": "uvx",
      "args": [
        "vmd-hydrate-mcp"
      ]
    }
  }
}

Add to claude_desktop_config.json (Settings → Developer → Edit Config).

Python package (PyPI)

{
  "mcpServers": {
    "vmd-hydrate-mcp": {
      "command": "uvx",
      "args": [
        "vmd-hydrate-mcp"
      ]
    }
  }
}

Add to ~/.cursor/mcp.json (global) or .cursor/mcp.json (per project).

Python package (PyPI)

{
  "servers": {
    "vmd-hydrate-mcp": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "vmd-hydrate-mcp"
      ]
    }
  }
}

Save as .vscode/mcp.json in your workspace.

Python package (PyPI)

{
  "mcpServers": {
    "vmd-hydrate-mcp": {
      "command": "uvx",
      "args": [
        "vmd-hydrate-mcp"
      ]
    }
  }
}

Add to ~/.codeium/windsurf/mcp_config.json.

Python package (PyPI)

{
  "mcpServers": {
    "vmd-hydrate-mcp": {
      "command": "uvx",
      "args": [
        "vmd-hydrate-mcp"
      ]
    }
  }
}

BADGE

Show your rank

Maintain this server? Add the live rank badge to your README — it updates automatically as the leaderboard changes.

Markdown

[![MCP Toplist](https://mcptoplist.com/badge/io.github.wjgoarxiv%2Fvmd-hydrate-mcp.svg)](https://mcptoplist.com/server/io.github.wjgoarxiv%2Fvmd-hydrate-mcp)

HTML

<a href="https://mcptoplist.com/server/io.github.wjgoarxiv%2Fvmd-hydrate-mcp"><img src="https://mcptoplist.com/badge/io.github.wjgoarxiv%2Fvmd-hydrate-mcp.svg" alt="MCP Toplist: Top 25% of 132,113" /></a>

Variants: append ?metric=score or ?metric=stars to the image URL.

REGISTRIES

Listed on 3 registries

PulseMCP

Official MCP

Glama

ORGANIZATION

wjgoarxiv

Organization

wjgoarxiv

Servers in org

Versions across org

Other servers by wjgoarxiv

pymol-mcp#32,258 · 1 ver

View all wjgoarxiv servers →

VERSIONS

Available versions (2)

Version	Published
0.2.0	Jul 3, 2026
0.1.0	Jul 2, 2026

FAQ

Frequently asked questions

Who maintains vmd-hydrate-mcp?: vmd-hydrate-mcp is maintained by wjgoarxiv, which publishes 2 MCP servers (3 total versions) tracked on MCP Toplist.
Is vmd-hydrate-mcp listed on the Official MCP Registry?: Yes — vmd-hydrate-mcp is listed on the Official MCP Registry, alongside PulseMCP and Glama.
How many versions does vmd-hydrate-mcp have?: MCP Toplist tracks 2 versions of vmd-hydrate-mcp, most recently published on Jul 3, 2026.
Where can I find the source code for vmd-hydrate-mcp?: The source code for vmd-hydrate-mcp is hosted at github.com/wjgoarxiv/vmd-hydrate-mcp.

Used in projects

Do you run this server?

Add to a project

Community projects list the MCP servers behind real agents and apps. Publish yours and this page will link to it.

EXPLORE

All MCP Servers Official MCP Servers GitHub MCP Servers Best MCP Servers Most Active MCP Servers New MCP Servers Best New MCP Servers