pymol-mcp
Rank #32,258glama/wjgoarxiv/pymol-mcp
Headless PyMOL for molecular visualization, GROMACS/LAMMPS MD trajectories, and clathrate-hydrate cage analysis: H-bond networks, F3/F4 order parameters, and TRACE cage perception + occupancy.
pymol-mcp is a Model Context Protocol (MCP) server published by wjgoarxiv. It ranks #32,258 of 132,113 servers tracked on MCP Toplist. pymol-mcp is listed on Glama, with 1 release tag tracked from its GitHub repository. It was first listed on Jul 2, 2026 and most recently updated on Jul 2, 2026.
Ranks ahead of 99,855 of 132,113 servers on MCP Toplist.
Use pymol-mcp
No credentials or required configuration declared — add it to your MCP client and go.
This server doesn't publish a machine-readable install config — see the repository README for install instructions.
Show your rank
Maintain this server? Add the live rank badge to your README — it updates automatically as the leaderboard changes.
[](https://mcptoplist.com/server/glama%2Fwjgoarxiv%2Fpymol-mcp)<a href="https://mcptoplist.com/server/glama%2Fwjgoarxiv%2Fpymol-mcp"><img src="https://mcptoplist.com/badge/glama%2Fwjgoarxiv%2Fpymol-mcp.svg" alt="MCP Toplist: Top 25% of 132,113" /></a>Variants: append ?metric=score or ?metric=stars to the image URL.
Listed on 1 registry
wjgoarxiv
Other servers by wjgoarxiv
View all wjgoarxiv servers →GitHub releases (1)
No registry surfaces explicit version metadata for this server. The list below shows release tags from the linked GitHub repository.
| Version | Published |
|---|---|
| v0.1.0 | Jul 2, 2026 |
Frequently asked questions
- Who maintains pymol-mcp?
- pymol-mcp is maintained by wjgoarxiv, which publishes 2 MCP servers (3 total versions) tracked on MCP Toplist.
- Is pymol-mcp listed on the Official MCP Registry?
- pymol-mcp is not on the Official MCP Registry. It is listed on Glama.
- How many versions does pymol-mcp have?
- No registry surfaces explicit version metadata for pymol-mcp; MCP Toplist tracks 1 release tag from its GitHub repository, most recently published on Jul 2, 2026.
- Where can I find the source code for pymol-mcp?
- The source code for pymol-mcp is hosted at github.com/wjgoarxiv/pymol-mcp.
Do you run this server?
Community projects list the MCP servers behind real agents and apps. Publish yours and this page will link to it.