Scanpy-MCP
Rank #22,165glama/scmcphub/scanpy-mcp
Provides a natural language interface for scRNA-Seq analysis using the Scanpy library, supporting operations such as data preprocessing, clustering, and visualization. It enables AI agents and clients to perform complex single-cell transcriptomics workflows through the Model Context Protocol.
Scanpy-MCP is a Model Context Protocol (MCP) server published by scmcphub. It ranks #22,165 of 115,460 servers tracked on MCP Toplist, and its repository has 2 GitHub stars. Scanpy-MCP is listed across 2 registries — Glama and mcp.so, with 5 release tags tracked from its GitHub repository. It was first listed on May 21, 2025 and most recently updated on Jun 27, 2025.
Ranks ahead of 93,295 of 115,460 servers on MCP Toplist.
Use Scanpy-MCP
No credentials or required configuration declared — add it to your MCP client and go.
This server doesn't publish a machine-readable install config — see the repository README for install instructions.
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Listed on 1 registry (1 delisted)
scmcphub
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GitHub releases (5)
No registry surfaces explicit version metadata for this server. The list below shows release tags from the linked GitHub repository.
| Version | Published |
|---|---|
| v0.5.0 | Jun 27, 2025 |
| v0.4.1 | Jun 1, 2025 |
| v0.4.0 | May 29, 2025 |
| v0.3.2 | May 22, 2025 |
| v0.3.1 | May 21, 2025 |
Frequently asked questions
- Who maintains Scanpy-MCP?
- Scanpy-MCP is maintained by scmcphub, which publishes 7 MCP servers (31 total versions) tracked on MCP Toplist.
- Is Scanpy-MCP listed on the Official MCP Registry?
- Scanpy-MCP is not on the Official MCP Registry. It is listed on Glama and mcp.so.
- How many versions does Scanpy-MCP have?
- No registry surfaces explicit version metadata for Scanpy-MCP; MCP Toplist tracks 5 release tags from its GitHub repository, most recently published on Jun 27, 2025.
- Where can I find the source code for Scanpy-MCP?
- The source code for Scanpy-MCP is hosted at github.com/scmcphub/scanpy-mcp.