BioMCP-TS
Rank #1,501io.github.yeyuan98/biomcp-ts
Biomedical MCP server: genes, variants, trials, literature, patents, optional SQL/R/biowasm tools.
BioMCP-TS is a Model Context Protocol (MCP) server published by yeyuan98. It ranks #1,501 of 132,046 servers tracked on MCP Toplist, and its repository has 12 GitHub stars. BioMCP-TS is listed across 3 registries — Official MCP, Glama and mcp.so, with 7 tracked versions. It was first listed on Apr 26, 2026 and most recently updated on Sep 14, 2026.
Ranks ahead of 130,545 of 132,046 servers on MCP Toplist.
Use BioMCP-TS
No credentials or required configuration declared — add it to your MCP client and go.
claude mcp add biomcp-ts -e "ANALYSIS_BIOWASM=<your ANALYSIS_BIOWASM>" -e "ANALYSIS_R=<your ANALYSIS_R>" -e "DB_TYPE=<your DB_TYPE>" -e "NCBI_API_KEY=<your NCBI_API_KEY>" -e "S2_API_KEY=<your S2_API_KEY>" -e "OPENFDA_API_KEY=<your OPENFDA_API_KEY>" -e "ONCOKB_TOKEN=<your ONCOKB_TOKEN>" -e "DISGENET_API_KEY=<your DISGENET_API_KEY>" -- npx -y biomcpReplace each placeholder with your own value before saving.
[mcp_servers.biomcp-ts]
command = "npx"
args = ["-y", "biomcp"]
[mcp_servers.biomcp-ts.env]
ANALYSIS_BIOWASM = "<your ANALYSIS_BIOWASM>"
ANALYSIS_R = "<your ANALYSIS_R>"
DB_TYPE = "<your DB_TYPE>"
NCBI_API_KEY = "<your NCBI_API_KEY>"
S2_API_KEY = "<your S2_API_KEY>"
OPENFDA_API_KEY = "<your OPENFDA_API_KEY>"
ONCOKB_TOKEN = "<your ONCOKB_TOKEN>"
DISGENET_API_KEY = "<your DISGENET_API_KEY>"Add to ~/.codex/config.toml. Replace each placeholder with your own value before saving.
{
"mcpServers": {
"biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"ANALYSIS_BIOWASM": "<your ANALYSIS_BIOWASM>",
"ANALYSIS_R": "<your ANALYSIS_R>",
"DB_TYPE": "<your DB_TYPE>",
"NCBI_API_KEY": "<your NCBI_API_KEY>",
"S2_API_KEY": "<your S2_API_KEY>",
"OPENFDA_API_KEY": "<your OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<your ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<your DISGENET_API_KEY>"
}
}
}
}Add to claude_desktop_config.json (Settings → Developer → Edit Config). Replace each placeholder with your own value before saving.
{
"mcpServers": {
"biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"ANALYSIS_BIOWASM": "<your ANALYSIS_BIOWASM>",
"ANALYSIS_R": "<your ANALYSIS_R>",
"DB_TYPE": "<your DB_TYPE>",
"NCBI_API_KEY": "<your NCBI_API_KEY>",
"S2_API_KEY": "<your S2_API_KEY>",
"OPENFDA_API_KEY": "<your OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<your ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<your DISGENET_API_KEY>"
}
}
}
}Add to ~/.cursor/mcp.json (global) or .cursor/mcp.json (per project). Replace each placeholder with your own value before saving.
{
"servers": {
"biomcp-ts": {
"type": "stdio",
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"ANALYSIS_BIOWASM": "<your ANALYSIS_BIOWASM>",
"ANALYSIS_R": "<your ANALYSIS_R>",
"DB_TYPE": "<your DB_TYPE>",
"NCBI_API_KEY": "<your NCBI_API_KEY>",
"S2_API_KEY": "<your S2_API_KEY>",
"OPENFDA_API_KEY": "<your OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<your ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<your DISGENET_API_KEY>"
}
}
}
}Save as .vscode/mcp.json in your workspace. Replace each placeholder with your own value before saving.
{
"mcpServers": {
"biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"ANALYSIS_BIOWASM": "<your ANALYSIS_BIOWASM>",
"ANALYSIS_R": "<your ANALYSIS_R>",
"DB_TYPE": "<your DB_TYPE>",
"NCBI_API_KEY": "<your NCBI_API_KEY>",
"S2_API_KEY": "<your S2_API_KEY>",
"OPENFDA_API_KEY": "<your OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<your ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<your DISGENET_API_KEY>"
}
}
}
}Add to ~/.codeium/windsurf/mcp_config.json. Replace each placeholder with your own value before saving.
{
"mcpServers": {
"biomcp-ts": {
"command": "npx",
"args": [
"-y",
"biomcp"
],
"env": {
"ANALYSIS_BIOWASM": "<your ANALYSIS_BIOWASM>",
"ANALYSIS_R": "<your ANALYSIS_R>",
"DB_TYPE": "<your DB_TYPE>",
"NCBI_API_KEY": "<your NCBI_API_KEY>",
"S2_API_KEY": "<your S2_API_KEY>",
"OPENFDA_API_KEY": "<your OPENFDA_API_KEY>",
"ONCOKB_TOKEN": "<your ONCOKB_TOKEN>",
"DISGENET_API_KEY": "<your DISGENET_API_KEY>"
}
}
}
}Replace each placeholder with your own value before saving.
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[](https://mcptoplist.com/server/io.github.yeyuan98%2Fbiomcp-ts)<a href="https://mcptoplist.com/server/io.github.yeyuan98%2Fbiomcp-ts"><img src="https://mcptoplist.com/badge/io.github.yeyuan98%2Fbiomcp-ts.svg" alt="MCP Toplist: Top 5% of 132,046" /></a>Variants: append ?metric=score or ?metric=stars to the image URL.
Listed on 3 registries
yeyuan98
Available versions (7)
| Version | Published |
|---|---|
| 1.4.3 | Sep 14, 2026 |
| 1.4.2 | Sep 10, 2026 |
| 1.1.1 | Sep 3, 2026 |
| 1.1.0 | Sep 3, 2026 |
| 1.0.0 | Sep 1, 2026 |
| 0.9.2 | Sep 1, 2026 |
| 0.9.0 | Aug 31, 2026 |
Frequently asked questions
- Who maintains BioMCP-TS?
- BioMCP-TS is maintained by yeyuan98, which publishes 1 MCP server (7 total versions) tracked on MCP Toplist.
- Is BioMCP-TS listed on the Official MCP Registry?
- Yes — BioMCP-TS is listed on the Official MCP Registry, alongside Glama and mcp.so.
- How many versions does BioMCP-TS have?
- MCP Toplist tracks 7 versions of BioMCP-TS, most recently published on Sep 14, 2026.
- Where can I find the source code for BioMCP-TS?
- The source code for BioMCP-TS is hosted at github.com/yeyuan98/biomcp-ts.
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