SERVER

phylokit-mcp

Rank #9,115

io.github.musharna/phylokit-mcp

Phylogenetic inference via IQ-TREE 3 — never returns a topology without its support

7 versions

by musharna (8 servers)View repository ↗

First listed

Jul 30, 2026

Last publish date

Sep 26, 2026

PURPOSE

What you can do with phylokit-mcp

phylokit-mcp is a Model Context Protocol (MCP) server published by musharna. It ranks #9,115 of 144,396 active servers on MCP Toplist. phylokit-mcp is listed across 2 registries — Official MCP and Glama, with 7 tracked versions. It was first listed on Jul 30, 2026 and most recently updated on Sep 26, 2026.

Not verifiedMCP Toplist has not yet written a checked profile for this server, so the paragraph above is assembled from registry data only. The repository README is the authority on what it does.

CAPABILITIES AND LIMITATIONS

What phylokit-mcp can and cannot do

Not verifiedMCP Toplist has not catalogued this server's tools or limitations. The repository README lists them.

REQUIREMENTS

What you need before using phylokit-mcp

DeclaredNo credentialsNo credentials declared

The registry listing declares no required environment variables or authentication. This is declared metadata, not a verified install — the repository README is the authority.

Declared by Glama, last synced Oct 16, 2026. Not independently verified by MCP Toplist.

Declared in the registry install config

OMP_NUM_THREADS · optional
MKL_NUM_THREADS · optional

INSTALLATION AND FIRST TASK

Connect phylokit-mcp and confirm it works

Python package (PyPI)

claude mcp add phylokit-mcp -e "OMP_NUM_THREADS=<your OMP_NUM_THREADS>" -e "MKL_NUM_THREADS=<your MKL_NUM_THREADS>" -- uvx phylokit-mcp

Replace each placeholder with your own value before saving.

Python package (PyPI)

[mcp_servers.phylokit-mcp]
command = "uvx"
args = ["phylokit-mcp"]

[mcp_servers.phylokit-mcp.env]
OMP_NUM_THREADS = "<your OMP_NUM_THREADS>"
MKL_NUM_THREADS = "<your MKL_NUM_THREADS>"

Add to ~/.codex/config.toml. Replace each placeholder with your own value before saving.

Python package (PyPI)

{
  "mcpServers": {
    "phylokit-mcp": {
      "command": "uvx",
      "args": [
        "phylokit-mcp"
      ],
      "env": {
        "OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
        "MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
      }
    }
  }
}

Add to claude_desktop_config.json (Settings → Developer → Edit Config). Replace each placeholder with your own value before saving.

Python package (PyPI)

{
  "mcpServers": {
    "phylokit-mcp": {
      "command": "uvx",
      "args": [
        "phylokit-mcp"
      ],
      "env": {
        "OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
        "MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
      }
    }
  }
}

Add to ~/.cursor/mcp.json (global) or .cursor/mcp.json (per project). Replace each placeholder with your own value before saving.

Python package (PyPI)

{
  "servers": {
    "phylokit-mcp": {
      "type": "stdio",
      "command": "uvx",
      "args": [
        "phylokit-mcp"
      ],
      "env": {
        "OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
        "MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
      }
    }
  }
}

Save as .vscode/mcp.json in your workspace. Replace each placeholder with your own value before saving.

Python package (PyPI)

{
  "mcpServers": {
    "phylokit-mcp": {
      "command": "uvx",
      "args": [
        "phylokit-mcp"
      ],
      "env": {
        "OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
        "MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
      }
    }
  }
}

Add to ~/.codeium/windsurf/mcp_config.json. Replace each placeholder with your own value before saving.

Python package (PyPI)

{
  "mcpServers": {
    "phylokit-mcp": {
      "command": "uvx",
      "args": [
        "phylokit-mcp"
      ],
      "env": {
        "OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
        "MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
      }
    }
  }
}

Replace each placeholder with your own value before saving.

First successful task

After adding the config, ask your client to list this server's tools. A tool list confirms the connection; an empty list or an error means the server did not start or needs credentials.

ALTERNATIVES

When to choose another server

Other servers by musharna

View all musharna servers →

No task-specific alternatives are catalogued for phylokit-mcpyet; the list above is its publisher's other servers.

MAINTENANCE AND EVIDENCE

What changed, and when this was checked

First listed: Jul 30, 2026
Latest version published: Sep 26, 2026
Version history: 7 versions tracked (below)
Requirements evidence: Declared by Glama, last synced Oct 16, 2026. Not independently verified by MCP Toplist.
Profile checked: Not yet — purpose, capabilities and requirements above come from registry data only
Ranking data as of: Oct 16, 2026

Registry sightings

Glama ↗listed since Jul 31, 2026 · still listed
Official MCP ↗listed since Jul 31, 2026 · still listed

Do you maintain phylokit-mcp? to correct or enrich this profile.

VERSIONS

Available versions (7)

Version	Published
0.6.0	Sep 26, 2026
0.5.1	Sep 23, 2026
0.5.0	Sep 19, 2026
0.4.0	Aug 2, 2026
0.3.0	Aug 1, 2026
0.2.2	Jul 31, 2026
0.2.1	Jul 31, 2026

STANDING

#9,115of 144,396 active serversTop 10%

Ranks ahead of 135,281 of 144,396 servers on MCP Toplist.

BADGE

Show your rank

Maintain this server? Add the live rank badge to your README — it updates automatically as the leaderboard changes.

Markdown

[![MCP Toplist](https://mcptoplist.com/badge/io.github.musharna%2Fphylokit-mcp.svg)](https://mcptoplist.com/server/io.github.musharna%2Fphylokit-mcp)

HTML

<a href="https://mcptoplist.com/server/io.github.musharna%2Fphylokit-mcp"><img src="https://mcptoplist.com/badge/io.github.musharna%2Fphylokit-mcp.svg" alt="MCP Toplist: Top 10% of 144,396" /></a>

Variants: append ?metric=score or ?metric=stars to the image URL.

FAQ

Frequently asked questions

Who maintains phylokit-mcp?: phylokit-mcp is maintained by musharna, which publishes 8 MCP servers (216 total versions) tracked on MCP Toplist.
Is phylokit-mcp listed on the Official MCP Registry?: Yes — phylokit-mcp is listed on the Official MCP Registry, alongside Glama.
How many versions does phylokit-mcp have?: MCP Toplist tracks 7 versions of phylokit-mcp, most recently published on Sep 26, 2026.
Where can I find the source code for phylokit-mcp?: The source code for phylokit-mcp is hosted at github.com/musharna/phylokit-mcp.

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