phylokit-mcp
Rank #9,481io.github.musharna/phylokit-mcp
Phylogenetic inference via IQ-TREE 2 — never returns a topology without its support
phylokit-mcp is a Model Context Protocol (MCP) server published by musharna. It ranks #9,481 of 115,460 servers tracked on MCP Toplist. phylokit-mcp is listed across 2 registries — Official MCP and Glama, with 2 tracked versions. It was first listed on Jul 30, 2026 and most recently updated on Aug 1, 2026.
Ranks ahead of 105,979 of 115,460 servers on MCP Toplist.
Use phylokit-mcp
No credentials or required configuration declared — add it to your MCP client and go.
claude mcp add phylokit-mcp -e "OMP_NUM_THREADS=<your OMP_NUM_THREADS>" -e "MKL_NUM_THREADS=<your MKL_NUM_THREADS>" -- uvx phylokit-mcpReplace each placeholder with your own value before saving.
[mcp_servers.phylokit-mcp]
command = "uvx"
args = ["phylokit-mcp"]
[mcp_servers.phylokit-mcp.env]
OMP_NUM_THREADS = "<your OMP_NUM_THREADS>"
MKL_NUM_THREADS = "<your MKL_NUM_THREADS>"Add to ~/.codex/config.toml. Replace each placeholder with your own value before saving.
{
"mcpServers": {
"phylokit-mcp": {
"command": "uvx",
"args": [
"phylokit-mcp"
],
"env": {
"OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
"MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
}
}
}
}Add to claude_desktop_config.json (Settings → Developer → Edit Config). Replace each placeholder with your own value before saving.
{
"mcpServers": {
"phylokit-mcp": {
"command": "uvx",
"args": [
"phylokit-mcp"
],
"env": {
"OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
"MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
}
}
}
}Add to ~/.cursor/mcp.json (global) or .cursor/mcp.json (per project). Replace each placeholder with your own value before saving.
{
"servers": {
"phylokit-mcp": {
"type": "stdio",
"command": "uvx",
"args": [
"phylokit-mcp"
],
"env": {
"OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
"MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
}
}
}
}Save as .vscode/mcp.json in your workspace. Replace each placeholder with your own value before saving.
{
"mcpServers": {
"phylokit-mcp": {
"command": "uvx",
"args": [
"phylokit-mcp"
],
"env": {
"OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
"MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
}
}
}
}Add to ~/.codeium/windsurf/mcp_config.json. Replace each placeholder with your own value before saving.
{
"mcpServers": {
"phylokit-mcp": {
"command": "uvx",
"args": [
"phylokit-mcp"
],
"env": {
"OMP_NUM_THREADS": "<your OMP_NUM_THREADS>",
"MKL_NUM_THREADS": "<your MKL_NUM_THREADS>"
}
}
}
}Replace each placeholder with your own value before saving.
Show your rank
Maintain this server? Add the live rank badge to your README — it updates automatically as the leaderboard changes.
[](https://mcptoplist.com/server/io.github.musharna%2Fphylokit-mcp)<a href="https://mcptoplist.com/server/io.github.musharna%2Fphylokit-mcp"><img src="https://mcptoplist.com/badge/io.github.musharna%2Fphylokit-mcp.svg" alt="MCP Toplist: Top 10% of 115,460" /></a>Variants: append ?metric=score or ?metric=stars to the image URL.
Listed on 2 registries
musharna
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Available versions (2)
| Version | Published |
|---|---|
| 0.3.0 | Aug 1, 2026 |
| 0.2.1 | Jul 31, 2026 |
Frequently asked questions
- Who maintains phylokit-mcp?
- phylokit-mcp is maintained by musharna, which publishes 7 MCP servers (39 total versions) tracked on MCP Toplist.
- Is phylokit-mcp listed on the Official MCP Registry?
- Yes — phylokit-mcp is listed on the Official MCP Registry, alongside Glama.
- How many versions does phylokit-mcp have?
- MCP Toplist tracks 2 versions of phylokit-mcp, most recently published on Aug 1, 2026.
- Where can I find the source code for phylokit-mcp?
- The source code for phylokit-mcp is hosted at github.com/musharna/phylokit-mcp.