Fiji MCP Server
Rank #12,968glama/surajinacademia/Fiji_imageJ_mcp
Enables AI agents to control Fiji/ImageJ for microscopy image analysis through natural language commands, supporting operations like image opening, filtering, particle analysis, and automated workflows.
Fiji MCP Server is a Model Context Protocol (MCP) server published by surajinacademia. It ranks #12,968 of 132,405 servers tracked on MCP Toplist, and its repository has 2 GitHub stars. Fiji MCP Server is listed across 2 registries — Glama and PulseMCP, with 4 release tags tracked from its GitHub repository. It was first listed on Apr 11, 2026 and most recently updated on Aug 27, 2026.
Ranks ahead of 119,437 of 132,405 servers on MCP Toplist.
Use Fiji MCP Server
Requires user-supplied configuration before first use — typically an API key, token or connection string set via environment variables.
This server doesn't publish a machine-readable install config — see the repository README for install instructions.
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[](https://mcptoplist.com/server/glama%2Fsurajinacademia%2FFiji_imageJ_mcp)<a href="https://mcptoplist.com/server/glama%2Fsurajinacademia%2FFiji_imageJ_mcp"><img src="https://mcptoplist.com/badge/glama%2Fsurajinacademia%2FFiji_imageJ_mcp.svg" alt="MCP Toplist: Top 10% of 132,405" /></a>Variants: append ?metric=score or ?metric=stars to the image URL.
Listed on 2 registries
surajinacademia
Other servers by surajinacademia
View all surajinacademia servers →GitHub releases (4)
No registry surfaces explicit version metadata for this server. The list below shows release tags from the linked GitHub repository.
| Version | Published |
|---|---|
| v0.2.0 | Aug 27, 2026 |
| v0.1.3 | Apr 11, 2026 |
| v1.0.3 | Apr 11, 2026 |
| v0.1.1 | Apr 11, 2026 |
Frequently asked questions
- Who maintains Fiji MCP Server?
- Fiji MCP Server is maintained by surajinacademia, which publishes 2 MCP servers (9 total versions) tracked on MCP Toplist.
- Is Fiji MCP Server listed on the Official MCP Registry?
- Fiji MCP Server is not on the Official MCP Registry. It is listed on Glama and PulseMCP.
- How many versions does Fiji MCP Server have?
- No registry surfaces explicit version metadata for Fiji MCP Server; MCP Toplist tracks 4 release tags from its GitHub repository, most recently published on Aug 27, 2026.
- Where can I find the source code for Fiji MCP Server?
- The source code for Fiji MCP Server is hosted at github.com/surajinacademia/fiji_imagej_mcp.
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