Fiji MCP Server
Rank #15,434glama/surajinacademia/Fiji_imageJ_mcp
Enables AI agents to control Fiji/ImageJ for microscopy image analysis through natural language commands, supporting operations like image opening, filtering, particle analysis, and automated workflows.
What you can do with Fiji MCP Server
Fiji MCP Server is a Model Context Protocol (MCP) server published by surajinacademia. It ranks #15,434 of 168,415 active servers on MCP Toplist, and its repository has 6 GitHub stars. Fiji MCP Server is listed across 2 registries — Glama and PulseMCP, with 4 release tags tracked from its GitHub repository. It was first listed on Apr 11, 2026 and most recently updated on Aug 27, 2026.
Not verifiedMCP Toplist has not yet written a checked profile for this server, so the paragraph above is assembled from registry data only. The repository README is the authority on what it does.
What Fiji MCP Server can and cannot do
Not verifiedMCP Toplist has not catalogued this server's tools or limitations. The repository README lists them.
What you need before using Fiji MCP Server
The registry listing declares required configuration before first use — typically an API key, token or connection string set via environment variables.
Declared by Glama, last synced Nov 4, 2026. Not independently verified by MCP Toplist.
No runtime, credential or payment requirements are recorded for this server beyond the declaration above.
Connect Fiji MCP Server and confirm it works
Install configuration unavailable. No registry publishes a machine-readable install config for this server — follow the repository README.
After adding the config, ask your client to list this server's tools. A tool list confirms the connection; an empty list or an error means the server did not start or needs credentials.
When to choose another server
No task-specific alternatives are catalogued for Fiji MCP Serveryet; the list above is its publisher's other servers.
What changed, and when this was checked
- First listed
- Apr 11, 2026
- Latest release tag
- Aug 27, 2026
- Version history
- 4 release tags tracked (below)
- Requirements evidence
- Declared by Glama, last synced Nov 4, 2026. Not independently verified by MCP Toplist.
- Profile checked
- Not yet — purpose, capabilities and requirements above come from registry data only
- Ranking data as of
- Nov 4, 2026
- Glama ↗listed since May 27, 2026 · still listed
- PulseMCP ↗listed since Jun 10, 2026 · still listed
Do you maintain Fiji MCP Server? to correct or enrich this profile.
GitHub releases (4)
No registry surfaces explicit version metadata for this server. The list below shows release tags from the linked GitHub repository.
| Version | Published |
|---|---|
| v0.2.0 | Aug 27, 2026 |
| v0.1.3 | Apr 11, 2026 |
| v1.0.3 | Apr 11, 2026 |
| v0.1.1 | Apr 11, 2026 |
Ranks ahead of 152,981 of 168,415 servers on MCP Toplist.
Show your rank
Maintain this server? Add the live rank badge to your README — it updates automatically as the leaderboard changes.
[](https://mcptoplist.com/server/glama%2Fsurajinacademia%2FFiji_imageJ_mcp)<a href="https://mcptoplist.com/server/glama%2Fsurajinacademia%2FFiji_imageJ_mcp"><img src="https://mcptoplist.com/badge/glama%2Fsurajinacademia%2FFiji_imageJ_mcp.svg" alt="MCP Toplist: Top 10% of 168,415" /></a>Variants: append ?metric=score or ?metric=stars to the image URL.
Frequently asked questions
- Who maintains Fiji MCP Server?
- Fiji MCP Server is maintained by surajinacademia, which publishes 2 MCP servers (9 total versions) tracked on MCP Toplist.
- Is Fiji MCP Server listed on the Official MCP Registry?
- Fiji MCP Server is not on the Official MCP Registry. It is listed on Glama and PulseMCP.
- How many versions does Fiji MCP Server have?
- No registry surfaces explicit version metadata for Fiji MCP Server; MCP Toplist tracks 4 release tags from its GitHub repository, most recently published on Aug 27, 2026.
- Where can I find the source code for Fiji MCP Server?
- The source code for Fiji MCP Server is hosted at github.com/surajinacademia/fiji_imagej_mcp.
Do you run this server?
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