SERVER

PyMOL-MCP

Rank #46,671

glama/jonathan6620/pymol-mcp

Connects PyMOL to Claude AI for conversational structural biology, molecular visualization, and analysis through natural language.

First listed
Jul 22, 2026
Last publish date
—
OVERVIEW

PyMOL-MCP is a Model Context Protocol (MCP) server published by jonathan6620. It ranks #46,671 of 137,138 servers tracked on MCP Toplist. PyMOL-MCP is listed on Glama, and ships as a single rolling release with no explicit version metadata. It was first listed on Jul 22, 2026.

STANDING
#46,671of 137,138 tracked serversTop 50%

Ranks ahead of 90,467 of 137,138 servers on MCP Toplist.

CONNECT

Use PyMOL-MCP

No setupRuns out of the box

No credentials or required configuration declared — add it to your MCP client and go.

This server doesn't publish a machine-readable install config — see the repository README for install instructions.

BADGE

Show your rank

Maintain this server? Add the live rank badge to your README — it updates automatically as the leaderboard changes.

MCP Toplist: Top 50% of 137,138
Markdown
[![MCP Toplist](https://mcptoplist.com/badge/glama%2Fjonathan6620%2Fpymol-mcp.svg)](https://mcptoplist.com/server/glama%2Fjonathan6620%2Fpymol-mcp)
HTML
<a href="https://mcptoplist.com/server/glama%2Fjonathan6620%2Fpymol-mcp"><img src="https://mcptoplist.com/badge/glama%2Fjonathan6620%2Fpymol-mcp.svg" alt="MCP Toplist: Top 50% of 137,138" /></a>

Variants: append ?metric=score or ?metric=stars to the image URL.

REGISTRIES

Listed on 1 registry

ORGANIZATION

jonathan6620

Organization
Servers in org
1
Versions across org
0
VERSIONS

Not versioned

This server is published through a registry that does not expose explicit version metadata, and no GitHub release tags were found on the linked repository. The listing tracks a single rolling release.

FAQ

Frequently asked questions

Who maintains PyMOL-MCP?
PyMOL-MCP is maintained by jonathan6620, which publishes 1 MCP server (0 total versions) tracked on MCP Toplist.
Is PyMOL-MCP listed on the Official MCP Registry?
PyMOL-MCP is not on the Official MCP Registry. It is listed on Glama.
How many versions does PyMOL-MCP have?
PyMOL-MCP ships as a single rolling release with no explicit version metadata.
Where can I find the source code for PyMOL-MCP?
The source code for PyMOL-MCP is hosted at github.com/jonathan6620/pymol-mcp.
Used in projects

Do you run this server?

Add to a project

Community projects list the MCP servers behind real agents and apps. Publish yours and this page will link to it.

EXPLORE