PDB MCP Server
Rank #18,323glama/Augmented-Nature/PDB-MCP-Server
A Model Context Protocol (MCP) server that provides access to the Protein Data Bank (PDB) - the worldwide repository of information about the 3D structures of proteins, nucleic acids, and complex assemblies.
PDB MCP Server is a Model Context Protocol (MCP) server published by Augmented-Nature. It ranks #18,323 of 115,591 servers tracked on MCP Toplist, and its repository has 25 GitHub stars. PDB MCP Server is listed across 3 registries — Glama, PulseMCP and mcp.so, and ships as a single rolling release with no explicit version metadata. It was first listed on May 29, 2025.
Ranks ahead of 97,268 of 115,591 servers on MCP Toplist.
Use PDB MCP Server
No credentials or required configuration declared — add it to your MCP client and go.
This server doesn't publish a machine-readable install config — see the repository README for install instructions.
Show your rank
Maintain this server? Add the live rank badge to your README — it updates automatically as the leaderboard changes.
[](https://mcptoplist.com/server/glama%2FAugmented-Nature%2FPDB-MCP-Server)<a href="https://mcptoplist.com/server/glama%2FAugmented-Nature%2FPDB-MCP-Server"><img src="https://mcptoplist.com/badge/glama%2FAugmented-Nature%2FPDB-MCP-Server.svg" alt="MCP Toplist: Top 25% of 115,591" /></a>Variants: append ?metric=score or ?metric=stars to the image URL.
Listed on 2 registries (1 delisted)
Augmented-Nature
Other servers by Augmented-Nature
- ChEMBL MCP Server#11,501
- Unofficial PubChem MCP Server#14,586
- AlphaFold MCP Server#16,224
- UniProt MCP Server#19,930
- OpenFDA MCP Server#23,459
- PubMed MCP Server#24,003
- Reactome MCP Server#24,368
- OpenTargets MCP Server#25,073
- NCBI Datasets MCP Server#25,114
- BioOntology MCP Server#27,106
- GeneOntology MCP Server#28,011
- KEGG MCP Server#28,550
Not versioned
This server is published through registries that do not expose explicit version metadata, and no GitHub release tags were found on the linked repository. The listing tracks a single rolling release.
Frequently asked questions
- Who maintains PDB MCP Server?
- PDB MCP Server is maintained by Augmented-Nature, which publishes 20 MCP servers (0 total versions) tracked on MCP Toplist.
- Is PDB MCP Server listed on the Official MCP Registry?
- PDB MCP Server is not on the Official MCP Registry. It is listed on Glama, PulseMCP and mcp.so.
- How many versions does PDB MCP Server have?
- PDB MCP Server ships as a single rolling release with no explicit version metadata.
- Where can I find the source code for PDB MCP Server?
- The source code for PDB MCP Server is hosted at github.com/augmented-nature/pdb-mcp-server.